matrix-clustering JASPAR_2020

matrix-clustering  -v 2 -matrix JASPAR_2020_CORE_+_UNVALIDATED_plants data/motifs/Motifs_parsed_ID/JASPAR2020_Unvalidated_+_CORE_plants.tf tf -hclust_method average -calc sum -title 'JASPAR 2020 plants' -metric_build_tree Ncor -lth w 5 -lth cor 0.7 -lth Ncor 0.5 -label_in_tree name -return json -quick -radial_tree_only -o results/JASPAR_2020_matrix_clustering/plants_CORE_+_UNVALIDATED/radial_trees/JASPAR_2020_CORE_+_UNVALIDATED_matrix_clustering_plants -calc mean -ID_link_color_table results/annotations/plants/jaspar2020_plants_Unvalidated_+_CORE_annotations_with_colours.tsv

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

Download
Root motifs

Complete results [zip]

Parameters used

Linkage method

Similarity metric

Thresholds to partition the tree

635

Download

Download

average

Ncor

Ncor = 0.5
cor = 0.7
w = 5

RSAT - matrix-clustering result

Analysis: JASPAR_2020_plants (09/10/2019 13:41)

Command

Results Summary

Radial Tree