Detailed information of matrix profile MA1146.1

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Profile summary
Name: NR1H4::RXRA
Matrix ID: MA1146.1
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 10744760
Uniprot ID: P19793   Q96RI1  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 223 653 29 22 24 11 720 144 23 108 763 134 113 25 95 ]
C [ 172 55 15 9 49 875 13 121 92 102 112 773 798 383 313 ]
G [ 451 280 937 646 101 13 249 75 48 753 78 9 38 71 212 ]
T [ 154 11 19 324 826 100 17 660 838 37 48 83 51 521 380 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix IDBase IDVersionNameSpeciesFamilyClassSequence logo
MA1146.1 MA1146 1 NR1H4::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
     
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There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Consensus:

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GC Content: