JASPAR Collection PBM

Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0026.1 Gm397_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0027.1 Gmeb1_1 Mus musculus Other Alpha-Helix Sand
PB0028.1 Hbp1_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0029.1 Hic1_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0030.1 Hnf4a_1 Mus musculus Zinc-coordinating Hormone-nuclear Receptor
PB0031.1 Hoxa3_1 Mus musculus Helix-Turn-Helix Homeo
PB0032.1 IRC900814_1 Mus musculus
PB0033.1 Irf3_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0034.1 Irf4_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0035.1 Irf5_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0036.1 Irf6_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0037.1 Isgf3g_1 Mus musculus Winged Helix-Turn-Helix IRF
PB0038.1 Jundm2_1 Mus musculus Zipper-Type Leucine Zipper
PB0039.1 Klf7_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0040.1 Lef1_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0041.1 Mafb_1 Mus musculus Zipper-Type Leucine Zipper
PB0042.1 Mafk_1 Mus musculus Zipper-Type Leucine Zipper
PB0043.1 Max_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0044.1 Mtf1_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0045.1 Myb_1 Mus musculus Helix-Turn-Helix Myb
PB0046.1 Mybl1_1 Mus musculus Helix-Turn-Helix Myb
PB0047.1 Myf6_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0048.1 Nkx3-1_1 Mus musculus Helix-Turn-Helix Homeo
PB0049.1 Nr2f2_1 Mus musculus Zinc-coordinating Hormone-nuclear Receptor
PB0050.1 Osr1_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
Showing 25 profiles of page 2 from 9 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.